YtqI from Bacillus subtilis has both oligoribonuclease and pAp-phosphatase activity
Identifieur interne : 000182 ( France/Analysis ); précédent : 000181; suivant : 000183YtqI from Bacillus subtilis has both oligoribonuclease and pAp-phosphatase activity
Auteurs : Undine Mechold ; Gang Fang ; Saravuth Ngo ; Vasily Ogryzko [France] ; Antoine DanchinSource :
- Nucleic Acids Research [ 0305-1048 ] ; 2007.
Descripteurs français
- KwdFr :
- ADP (métabolisme), ARN (métabolisme), Bacillus subtilis (enzymologie), Escherichia coli (génétique), Exoribonucleases (génétique), Exoribonucleases (métabolisme), Phosphoric monoester hydrolases (génétique), Phosphoric monoester hydrolases (métabolisme), Phylogénie, Protéines bactériennes (), Protéines bactériennes (génétique), Protéines bactériennes (métabolisme), Spécificité du substrat, Test de complémentation.
- MESH :
- enzymologie : Bacillus subtilis.
- génétique : Escherichia coli, Exoribonucleases, Phosphoric monoester hydrolases, Protéines bactériennes.
- métabolisme : ADP, ARN, Exoribonucleases, Phosphoric monoester hydrolases, Protéines bactériennes.
- Phylogénie, Protéines bactériennes, Spécificité du substrat, Test de complémentation.
English descriptors
- KwdEn :
- Adenosine Diphosphate (metabolism), Bacillus subtilis (enzymology), Bacterial Proteins (classification), Bacterial Proteins (genetics), Bacterial Proteins (metabolism), Escherichia coli (genetics), Exoribonucleases (genetics), Exoribonucleases (metabolism), Genetic Complementation Test, Phosphoric Monoester Hydrolases (genetics), Phosphoric Monoester Hydrolases (metabolism), Phylogeny, RNA (metabolism), Substrate Specificity.
- MESH :
- chemical , classification : Bacterial Proteins.
- chemical , genetics : Bacterial Proteins, Exoribonucleases, Phosphoric Monoester Hydrolases.
- chemical , metabolism : Adenosine Diphosphate, Bacterial Proteins, Exoribonucleases, Phosphoric Monoester Hydrolases, RNA.
- enzymology : Bacillus subtilis.
- genetics : Escherichia coli.
- Genetic Complementation Test, Phylogeny, Substrate Specificity.
Abstract
Oligoribonuclease is the only RNase in
Url:
DOI: 10.1093/nar/gkm462
PubMed: 17586819
PubMed Central: 1935014
Affiliations:
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Links to Exploration step
PMC:1935014Le document en format XML
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type="main">YtqI from <italic>Bacillus subtilis</italic> has both oligoribonuclease and pAp-phosphatase activity</title><author><name sortKey="Mechold, Undine" sort="Mechold, Undine" uniqKey="Mechold U" first="Undine" last="Mechold">Undine Mechold</name><affiliation><nlm:aff wicri:cut=" and" id="AFF1">Institut Pasteur, URA 2171, Unité de Génétique des Génomes Bactériens, 75724 Paris Cedex 15</nlm:aff><wicri:noCountry code="subfield">75724 Paris Cedex 15</wicri:noCountry></affiliation></author><author><name sortKey="Fang, Gang" sort="Fang, Gang" uniqKey="Fang G" first="Gang" last="Fang">Gang Fang</name><affiliation><nlm:aff wicri:cut=" and" id="AFF1">Institut Pasteur, URA 2171, Unité de Génétique des Génomes Bactériens, 75724 Paris Cedex 15</nlm:aff><wicri:noCountry code="subfield">75724 Paris Cedex 15</wicri:noCountry></affiliation></author><author><name sortKey="Ngo, Saravuth" sort="Ngo, Saravuth" uniqKey="Ngo S" first="Saravuth" last="Ngo">Saravuth Ngo</name><affiliation><nlm:aff wicri:cut=" and" id="AFF1">Institut Pasteur, URA 2171, Unité de Génétique des Génomes Bactériens, 75724 Paris Cedex 15</nlm:aff><wicri:noCountry code="subfield">75724 Paris Cedex 15</wicri:noCountry></affiliation></author><author><name sortKey="Ogryzko, Vasily" sort="Ogryzko, Vasily" uniqKey="Ogryzko V" first="Vasily" last="Ogryzko">Vasily Ogryzko</name><affiliation wicri:level="3"><nlm:aff id="AFF1">Institut Gustave Roussy, UMR 8126, Unité Interactions Moléculaires et Cancer, 94805 Villejuif, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut Gustave Roussy, UMR 8126, Unité Interactions Moléculaires et Cancer, 94805 Villejuif</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region><settlement type="city">Villejuif</settlement></placeName></affiliation></author><author><name sortKey="Danchin, Antoine" sort="Danchin, Antoine" uniqKey="Danchin A" first="Antoine" last="Danchin">Antoine Danchin</name><affiliation><nlm:aff wicri:cut=" and" id="AFF1">Institut Pasteur, URA 2171, Unité de Génétique des Génomes Bactériens, 75724 Paris Cedex 15</nlm:aff><wicri:noCountry code="subfield">75724 Paris Cedex 15</wicri:noCountry></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2007">2007</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adenosine Diphosphate (metabolism)</term><term>Bacillus subtilis (enzymology)</term><term>Bacterial Proteins (classification)</term><term>Bacterial Proteins (genetics)</term><term>Bacterial Proteins (metabolism)</term><term>Escherichia coli (genetics)</term><term>Exoribonucleases (genetics)</term><term>Exoribonucleases (metabolism)</term><term>Genetic Complementation Test</term><term>Phosphoric Monoester Hydrolases (genetics)</term><term>Phosphoric Monoester Hydrolases (metabolism)</term><term>Phylogeny</term><term>RNA (metabolism)</term><term>Substrate Specificity</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADP (métabolisme)</term><term>ARN (métabolisme)</term><term>Bacillus subtilis (enzymologie)</term><term>Escherichia coli (génétique)</term><term>Exoribonucleases (génétique)</term><term>Exoribonucleases (métabolisme)</term><term>Phosphoric monoester hydrolases (génétique)</term><term>Phosphoric monoester hydrolases (métabolisme)</term><term>Phylogénie</term><term>Protéines bactériennes ()</term><term>Protéines bactériennes (génétique)</term><term>Protéines bactériennes (métabolisme)</term><term>Spécificité du substrat</term><term>Test de complémentation</term></keywords><keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>Bacterial Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Bacterial Proteins</term><term>Exoribonucleases</term><term>Phosphoric Monoester Hydrolases</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Adenosine Diphosphate</term><term>Bacterial Proteins</term><term>Exoribonucleases</term><term>Phosphoric Monoester Hydrolases</term><term>RNA</term></keywords><keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr"><term>Bacillus subtilis</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Bacillus subtilis</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Escherichia coli</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Escherichia coli</term><term>Exoribonucleases</term><term>Phosphoric monoester hydrolases</term><term>Protéines bactériennes</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>ADP</term><term>ARN</term><term>Exoribonucleases</term><term>Phosphoric monoester hydrolases</term><term>Protéines bactériennes</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genetic Complementation Test</term><term>Phylogeny</term><term>Substrate Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Phylogénie</term><term>Protéines bactériennes</term><term>Spécificité du substrat</term><term>Test de complémentation</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Oligoribonuclease is the only RNase in <italic>Escherichia coli</italic> that is able to degrade RNA oligonucleotides five residues and shorter in length. Firmicutes including <italic>Bacillus subtilis</italic> do not have an Oligoribonuclease (Orn) homologous protein and it is not yet understood which proteins accomplish the equivalent function in these organisms. We had previously identified oligoribonucleases Orn from <italic>E. coli</italic> and its human homolog Sfn in a screen for proteins that are regulated by 3′-phosphoadenosine 5′-phosphate (pAp). Here, we identify YtqI as a potential functional analog of Orn through its interaction with pAp. YtqI degrades RNA oligonucleotides <italic>in vitro</italic> with preference for 3-mers. In addition, YtqI has pAp-phosphatase activity <italic>in vitro</italic>. In agreement with these data, YtqI is able to complement both <italic>orn</italic> and <italic>cysQ</italic> mutants in <italic>E. coli</italic>. An <italic>ytqI</italic> mutant in <italic>B. subtilis</italic> shows impairment of growth in the absence of cysteine, a phenotype resembling that of a <italic>cysQ</italic> mutant in <italic>E. coli</italic>. Phylogenetic distribution of YtqI, Orn and CysQ supports bifunctionality of YtqI.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Hollams, Em" uniqKey="Hollams E">EM Hollams</name></author><author><name sortKey="Giles, Km" uniqKey="Giles K">KM Giles</name></author><author><name sortKey="Thomson, Am" uniqKey="Thomson A">AM Thomson</name></author><author><name sortKey="Leedman, Pj" uniqKey="Leedman P">PJ Leedman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Condon, C" uniqKey="Condon C">C Condon</name></author><author><name sortKey="Putzer, H" uniqKey="Putzer H">H Putzer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zuo, Y" uniqKey="Zuo Y">Y Zuo</name></author><author><name sortKey="Deutscher, Mp" uniqKey="Deutscher M">MP Deutscher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Condon, C" uniqKey="Condon C">C 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Frazao</name></author><author><name sortKey="Mcvey, Ce" uniqKey="Mcvey C">CE McVey</name></author><author><name sortKey="Amblar, M" uniqKey="Amblar M">M Amblar</name></author><author><name sortKey="Barbas, A" uniqKey="Barbas A">A Barbas</name></author><author><name sortKey="Vonrhein, C" uniqKey="Vonrhein C">C Vonrhein</name></author><author><name sortKey="Arraiano, Cm" uniqKey="Arraiano C">CM Arraiano</name></author><author><name sortKey="Carrondo, Ma" uniqKey="Carrondo M">MA Carrondo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vincent, Ha" uniqKey="Vincent H">HA Vincent</name></author><author><name sortKey="Deutscher, Mp" uniqKey="Deutscher M">MP Deutscher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mechold, U" uniqKey="Mechold U">U Mechold</name></author><author><name sortKey="Ogryzko, V" uniqKey="Ogryzko V">V Ogryzko</name></author><author><name sortKey="Ngo, S" uniqKey="Ngo S">S 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sortKey="Barbas, A" uniqKey="Barbas A">A Barbas</name></author><author><name sortKey="Fialho, Am" uniqKey="Fialho A">AM Fialho</name></author><author><name sortKey="Arraiano, Cm" uniqKey="Arraiano C">CM Arraiano</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cheng, Zf" uniqKey="Cheng Z">ZF Cheng</name></author><author><name sortKey="Deutscher, Mp" uniqKey="Deutscher M">MP Deutscher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Andrade, Jm" uniqKey="Andrade J">JM Andrade</name></author><author><name sortKey="Cairrao, F" uniqKey="Cairrao F">F Cairrao</name></author><author><name sortKey="Arraiano, Cm" uniqKey="Arraiano C">CM Arraiano</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cairrao, F" uniqKey="Cairrao F">F Cairrao</name></author><author><name sortKey="Cruz, A" uniqKey="Cruz A">A Cruz</name></author><author><name sortKey="Mori, H" uniqKey="Mori H">H 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uniqKey="Folcher M">M Folcher</name></author><author><name sortKey="Schauerte, A" uniqKey="Schauerte A">A Schauerte</name></author><author><name sortKey="Jenal, U" uniqKey="Jenal U">U Jenal</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Neuwald, Af" uniqKey="Neuwald A">AF Neuwald</name></author><author><name sortKey="Krishnan, Br" uniqKey="Krishnan B">BR Krishnan</name></author><author><name sortKey="Brikun, I" uniqKey="Brikun I">I Brikun</name></author><author><name sortKey="Kulakauskas, S" uniqKey="Kulakauskas S">S Kulakauskas</name></author><author><name sortKey="Suziedelis, K" uniqKey="Suziedelis K">K Suziedelis</name></author><author><name sortKey="Tomcsanyi, T" uniqKey="Tomcsanyi T">T Tomcsanyi</name></author><author><name sortKey="Leyh, Ts" uniqKey="Leyh T">TS Leyh</name></author><author><name sortKey="Berg, De" uniqKey="Berg D">DE Berg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Berndt, C" uniqKey="Berndt C">C Berndt</name></author><author><name sortKey="Lillig, Ch" uniqKey="Lillig C">CH Lillig</name></author><author><name sortKey="Wollenberg, M" uniqKey="Wollenberg M">M Wollenberg</name></author><author><name sortKey="Bill, E" uniqKey="Bill E">E Bill</name></author><author><name sortKey="Mansilla, Mc" uniqKey="Mansilla M">MC Mansilla</name></author><author><name sortKey="De Mendoza, D" uniqKey="De Mendoza D">D de Mendoza</name></author><author><name sortKey="Seidler, A" uniqKey="Seidler A">A Seidler</name></author><author><name sortKey="Schwenn, Jd" uniqKey="Schwenn J">JD Schwenn</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Williams, Sj" uniqKey="Williams S">SJ Williams</name></author><author><name sortKey="Senaratne, Rh" uniqKey="Senaratne R">RH Senaratne</name></author><author><name sortKey="Mougous, Jd" uniqKey="Mougous J">JD Mougous</name></author><author><name sortKey="Riley, Lw" uniqKey="Riley L">LW Riley</name></author><author><name sortKey="Bertozzi, Cr" uniqKey="Bertozzi C">CR Bertozzi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bick, Ja" uniqKey="Bick J">JA Bick</name></author><author><name sortKey="Leustek, T" uniqKey="Leustek T">T Leustek</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bick, Ja" uniqKey="Bick J">JA Bick</name></author><author><name sortKey="Dennis, Jj" uniqKey="Dennis J">JJ Dennis</name></author><author><name sortKey="Zylstra, Gj" uniqKey="Zylstra G">GJ Zylstra</name></author><author><name sortKey="Nowack, J" uniqKey="Nowack J">J Nowack</name></author><author><name sortKey="Leustek, T" uniqKey="Leustek T">T Leustek</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Abola, Ap" uniqKey="Abola A">AP Abola</name></author><author><name sortKey="Willits, Mg" uniqKey="Willits M">MG Willits</name></author><author><name sortKey="Wang, Rc" uniqKey="Wang R">RC Wang</name></author><author><name sortKey="Long, Sr" uniqKey="Long S">SR Long</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Guzman, Lm" uniqKey="Guzman L">LM Guzman</name></author><author><name sortKey="Belin, D" uniqKey="Belin D">D Belin</name></author><author><name sortKey="Carson, Mj" uniqKey="Carson M">MJ Carson</name></author><author><name sortKey="Beckwith, J" uniqKey="Beckwith J">J Beckwith</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>France</li></country><region><li>Île-de-France</li></region><settlement><li>Villejuif</li></settlement></list><tree><noCountry><name sortKey="Danchin, Antoine" sort="Danchin, Antoine" uniqKey="Danchin A" first="Antoine" last="Danchin">Antoine Danchin</name><name sortKey="Fang, Gang" sort="Fang, Gang" uniqKey="Fang G" first="Gang" last="Fang">Gang Fang</name><name sortKey="Mechold, Undine" sort="Mechold, Undine" uniqKey="Mechold U" first="Undine" last="Mechold">Undine Mechold</name><name sortKey="Ngo, Saravuth" sort="Ngo, Saravuth" uniqKey="Ngo S" first="Saravuth" last="Ngo">Saravuth Ngo</name></noCountry><country name="France"><region name="Île-de-France"><name sortKey="Ogryzko, Vasily" sort="Ogryzko, Vasily" uniqKey="Ogryzko V" first="Vasily" last="Ogryzko">Vasily Ogryzko</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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